6BCI Hydrolase Dna date Oct 20, 2017
title Wild-Type I-Ltri Bound To Non-Cognate C4 Substrate (Pre-Clea Complex)
authors C.Brown, K.Zhang, T.A.Mcmurrough, G.B.Gloor, D.R.Edgell, M.Junop
compound source
Molecule: Ribosomal Protein 3homing Endonuclease-Like Fusi Protein;
Chain: A
Engineered: Yes
 Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
Gene: Heg Fusion, Rps3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (27-Mer)
Chain: B
Engineered: Yes
Other_details: Ggtctaaacgtcggttaggagcatttg
Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483

Molecule: Dna (27-Mer)
Chain: D
Engineered: Yes
Other_details: Caaatgctcctaaccgacgtttagacc
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
Expression_system: Leptographium Truncatum
Expression_system_taxid: 330483
symmetry Space Group: C 1 2 1
R_factor 0.237 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.530 43.610 105.710 90.00 105.94 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActive site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases., McMurrough TA, Brown CM, Zhang K, Hausner G, Junop MS, Gloor GB, Edgell DR, Nucleic Acids Res. 2018 Oct 24. pii: 5144155. doi: 10.1093/nar/gky976. PMID:30357419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (6bci.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 6BCI
  • CSU: Contacts of Structural Units for 6BCI
  • Structure Factors (643 Kb)
  • Retrieve 6BCI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BCI from S2C, [Save to disk]
    • View 6BCI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BCI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bci_B] [6bci_A] [6bci_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BCI
  • Community annotation for 6BCI at PDBWiki (http://pdbwiki.org)

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