6E13 Oxidoreductase date Jul 09, 2018
title Pseudomonas Putida Pqqb With A Non-Physiological Zinc At The Site Binds The Substrate Mimic, 5-Cysteinyl-3,4- Dihydroxyphenylalanine (5-Cys-Dopa), Non-Specifically But S The Proposed Function Of The Enzyme In Pyrroloquinoline Qui Biosynthesis.
authors R.L.Evans Iii, C.M.Wilmot
compound source
Molecule: Coenzyme Pqq Synthesis Protein B
Chain: A
Synonym: Pyrroloquinoline Quinone Biosynthesis Protein B
Ec: 1.-.-.-
Engineered: Yes
Organism_scientific: Pseudomonas Putida (Strain Atcc 47054 6125 Ncimb 11950 Kt2440);
Organism_taxid: 160488
Strain: Atcc 47054 Dsm 6125 Ncimb 11950 Kt2440
Gene: Pqqb, Pp_0379
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.189 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.038 86.038 107.128 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand CL, HKS, ZN enzyme Oxidoreductase E.C.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Hydroxylase Activity for PqqB Provides a Missing Link in the Pyrroloquinoline Quinone Biosynthetic Pathway., Koehn EM, Latham JA, Armand T, Evans RL 3rd, Tu X, Wilmot CM, Iavarone AT, Klinman JP, J Am Chem Soc. 2019 Mar 13;141(10):4398-4405. doi: 10.1021/jacs.8b13453. Epub, 2019 Feb 27. PMID:30811189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6e13.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 6E13
  • CSU: Contacts of Structural Units for 6E13
  • Structure Factors (370 Kb)
  • Retrieve 6E13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E13 from S2C, [Save to disk]
  • View 6E13 in 3D
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  • Visual 3D analysis of 6E13
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e13_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E13
  • Community annotation for 6E13 at PDBWiki (http://pdbwiki.org)

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