6HKS Hydrolase date Sep 07, 2018
title Crystal Structure Of The Ptpn3 Pdz Domain Bound To The Hpv16 Oncoprotein C-Terminal Peptide
authors M.Genera, A.Haouz, C.Caillet-Saguy
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 3
Chain: A, B, C, D, E, F
Synonym: Protein-Tyrosine Phosphatase H1,Ptp-H1
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn3, Ptph1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: B

Molecule: Protein E6
Chain: G, H, I, J, K, L
Engineered: Yes

Organism_scientific: Human Papillomavirus Type 16
Organism_taxid: 333760
Gene: E6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: B
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.620 77.430 130.030 90.00 90.14 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand IOD enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceStructural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein., Genera M, Samson D, Raynal B, Haouz A, Baron B, Simenel C, Guerois R, Wolff N, Caillet-Saguy C, Sci Rep. 2019 May 15;9(1):7438. doi: 10.1038/s41598-019-43932-x. PMID:31092861
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (6hks.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (6hks.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (6hks.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (6hks.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (6hks.pdb5.gz) 36 Kb
  • Biological Unit Coordinates (6hks.pdb6.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 6HKS
  • CSU: Contacts of Structural Units for 6HKS
  • Structure Factors (1548 Kb)
  • Retrieve 6HKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6HKS from S2C, [Save to disk]
  • View 6HKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6HKS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6hks_C] [6hks_F] [6hks_H] [6hks_G] [6hks_J] [6hks_B] [6hks_L] [6hks_K] [6hks_I] [6hks_D] [6hks_E] [6hks_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6HKS
  • Community annotation for 6HKS at PDBWiki (http://pdbwiki.org)

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