6NYO	Ligase Transferase	date	Feb 11, 2019
title	Crystal Structure Of A Human Cdc34-Ubiquitin Thioester Mimet
authors	S.K.Olsen, K.M.Williams, J.H.Atkison
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 R2 Chain: A Fragment: Residues 1-202 Synonym: E2 Ubiquitin-Conjugating Enzyme R2,Ubiquitin Carri R2,Ubiquitin-Conjugating Enzyme E2-Cdc34b,Ubiquitin-Protein R2; Ec: 2.3.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2r2, Cdc34b, Ubc3b Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet29ntev
Molecule: Ubiquitin Chain: E Engineered: Yes		Organism_scientific: Schizosaccharomyces Pombe Organism_common: Fission Yeast Organism_taxid: 4896 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Codon Plus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.585 55.737 119.785 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	EDO, PO4, U94	enzyme	Transferase E.C.2.3.2.23 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (6nyo.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 6NYO CSU: Contacts of Structural Units for 6NYO Structure Factors (348 Kb) Retrieve 6NYO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NYO from S2C, [Save to disk]

View 6NYO in 3D

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Visual 3D analysis of 6NYO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6nyo_E] [6nyo_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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