1IOJ Apolipoprotein date May 12, 1998
title Human Apolipoprotein C-I, Nmr, 18 Structures
authors A.Rozek, J.T.Sparrow, K.H.Weisgraber, R.J.Cushley
compound source
Molecule: Apoc-I
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
related structures by homologous chain: 1EZE, 1OPP
Gene
Ontology
ChainFunctionProcessComponent
A
  • phosphatidylcholine-sterol O...
  • very-low-density lipoprotein...

    • Primary referenceConformation of human apolipoprotein C-I in a lipid-mimetic environment determined by CD and NMR spectroscopy., Rozek A, Sparrow JT, Weisgraber KH, Cushley RJ, Biochemistry. 1999 Nov 2;38(44):14475-84. PMID:10545169
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (290 Kb) [Save to disk]
  • Biological Unit Coordinates (1ioj.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1IOJ
  • Original NMR restraints for 1IOJ from PDB
  • Retrieve 1IOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IOJ from S2C, [Save to disk]
    • View 1IOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IOJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IOJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ioj__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ioj] [1ioj_A]
  • SWISS-PROT database: [P02654]
  • Domain organization of [APOC1_HUMAN] by SWISSPFAM
    • Other resources with information on 1IOJ
  • Community annotation for 1IOJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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