1BN8 Lyase date Jul 31, 1998
title Bacillus Subtilis Pectate Lyase
authors R.Pickersgill, G.Harris, J.Jenkins
compound source
Molecule: Protein (Pectate Lyase)
Chain: A
Ec: 4.2.2.2
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: S1103
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.900 89.000 50.700 90.00 108.93 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA enzyme Lyase E.C.4.2.2.2 BRENDA
related structures by homologous chain: 2BSP
Primary referenceThe structure of Bacillus subtilis pectate lyase in complex with calcium., Pickersgill R, Jenkins J, Harris G, Nasser W, Robert-Baudouy J, Nat Struct Biol 1994 Oct;1(10):717-23. PMID:7634076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (1bn8.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1BN8
  • CSU: Contacts of Structural Units for 1BN8
  • Likely Quarternary Molecular Structure file(s) for 1BN8
  • Structure Factors (309 Kb)
  • Retrieve 1BN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BN8 from S2C, [Save to disk]
  • Re-refined 1bn8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BN8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BN8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bn8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bn8_A] [1bn8]
  • SWISS-PROT database: [P39116]
  • Domain organization of [PEL_BACSU] by SWISSPFAM
  • Domain found in 1BN8: [Amb_all ] by SMART
    • Other resources with information on 1BN8
  • Community annotation for 1BN8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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