1DVF	Complex (Idiotope-Antiidiotope)	date	Apr 13, 1996
title	Idiotopic Antibody D1.3 Fv Fragment-Antiidiotopic Antibody E Fragment Complex
authors	B.C.Braden, B.A.Fields, X.Ysern, W.Dall'Acqua, F.A.Goldbaum, R.J. R.A.Mariuzza
compound		source
Molecule: Fv D1.3 Chain: A Engineered: Yes Other_details: Igg1, Kappa		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balb-C Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fv D1.3 Chain: B Engineered: Yes Other_details: Igg1, Kappa		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fv E5.2 Chain: C Engineered: Yes Other_details: Igg1, Kappa		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balb-C Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Fv E5.2 Chain: D Engineered: Yes Other_details: Igg1, Kappa		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.194 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 152.800 79.400 51.500 90.00 100.20 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ZN	enzyme
related structures	by homologous chain: 1FGV, 1G7H, 1G7M, 1H8N, 1JFQ
Gene Ontology	Chain Function Process Component A, C B
Primary reference	Crystal structure of an Fv-Fv idiotope-anti-idiotope complex at 1.9 A resolution., Braden BC, Fields BA, Ysern X, Dall'Acqua W, Goldbaum FA, Poljak RJ, Mariuzza RA, J Mol Biol 1996 Nov 22;264(1):137-51. PMID:8950273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (1dvf.pdb1.gz) 75 Kb Biological Unit Coordinates (1dvf.pdb2.gz) 148 Kb LPC: Ligand-Protein Contacts for 1DVF CSU: Contacts of Structural Units for 1DVF Likely Quarternary Molecular Structure file(s) for 1DVF Retrieve 1DVF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DVF from S2C, [Save to disk]

View 1DVF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DVF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DVF, from MSDmotif at EBI Genome occurence of 1DVF's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dvfa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1dvfb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1dvfc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1dvfd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dvf_C] [1dvf] [1dvf_A] [1dvf_B] [1dvf_D] SWISS-PROT database: [P01820] [P01635] [P01646] Domain organization of [HVM44_MOUSE] [KV5A3_MOUSE] [KV5AD_MOUSE] by SWISSPFAM Domain found in 1DVF: [IGv ] by SMART

Other resources with information on 1DVF

Community annotation for 1DVF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1DVF from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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