1E1Z Hydrolase date May 12, 2000
title Crystal Structure Of An Arylsulfatase A Mutant C69s
authors R.Von Buelow, B.Schmidt, T.Dierks, K.Von Figura, I.Uson
compound source
Molecule: Arylsulfatase A
Chain: P
Synonym: Cerebroside-3-Sulfate-Sulfatase
Ec: 3.1.6.8
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Testis
Cellular_location: Lysosome
Plasmid: Pmpsveh
Gene: Arsa
symmetry Space Group: I 4 2 2
R_factor 0.193 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.750 131.750 192.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.4 Å
ligand MG, NDG enzyme Hydrolase E.C.3.1.6.8 BRENDA
related structures by homologous chain: 1E2S, 1E33
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceCrystal structure of an enzyme-substrate complex provides insight into the interaction between human arylsulfatase A and its substrates during catalysis., von Bulow R, Schmidt B, Dierks T, von Figura K, Uson I, J Mol Biol 2001 Jan 12;305(2):269-77. PMID:11124905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1e1z.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 1E1Z
  • CSU: Contacts of Structural Units for 1E1Z
  • Likely Quarternary Molecular Structure file(s) for 1E1Z
  • Structure Factors (485 Kb)
  • Retrieve 1E1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E1Z from S2C, [Save to disk]
  • Re-refined 1e1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E1Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E1Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e1zp_, region P [Jmol] [rasmolscript] [script source]
  • Fold representative 1e1z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e1z] [1e1z_P]
  • SWISS-PROT database: [P15289]
  • Domain organization of [ARSA_HUMAN] by SWISSPFAM
  • Other resources with information on 1E1Z
  • Community annotation for 1E1Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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