3B8D Lyase date Nov 01, 2007
title Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
authors A.Maurady, J.Sygusch
compound source
Molecule: Fructose-Bisphosphate Aldolase A
Chain: A, B, C, D
Synonym: Muscle-Type Aldolase
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Aldoa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alphamcr
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb1
symmetry Space Group: P 1 21 1
R_factor 0.189 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
164.320 57.510 85.360 90.00 102.66 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme Lyase E.C. BRENDA
note 3B8D supersedes 1EWG
A, D, C, B

Primary referenceA conserved glutamate residue exhibits multifunctional catalytic roles in D-fructose-1,6-bisphosphate aldolases., Maurady A, Zdanov A, de Moissac D, Beaudry D, Sygusch J, J Biol Chem. 2002 Mar 15;277(11):9474-83. Epub 2002 Jan 4. PMID:11779856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (3b8d.pdb1.gz) 283 Kb
  • LPC: Ligand-Protein Contacts for 3B8D
  • CSU: Contacts of Structural Units for 3B8D
  • Structure Factors (536 Kb)
  • Retrieve 3B8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B8D from S2C, [Save to disk]
  • Re-refined 3b8d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B8D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3B8D, from MSDmotif at EBI
  • Fold representative 3b8d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b8d] [3b8d_C] [3b8d_A] [3b8d_B] [3b8d_D]
  • SWISS-PROT database: [P00883]
  • Domain organization of [ALDOA_RABIT] by SWISSPFAM
  • Other resources with information on 3B8D
  • Community annotation for 3B8D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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