1GNY	xylan-binding module CBM15	date
authors	Szabo, S., Jamal, S., Xie, H., Charnock, S.J., Bolam, D.N., Gilbert, H.J., Davies, G.J.
compound		source
symmetry		R_factor R_Free 0.177
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.63
ligand	NA, XYP	enzyme
note	1GNY is a representative structure
related structures	by homologous chain: 1US3
Primary reference	Structure of a family 15 carbohydrate-binding module in complex with xylopentaose. Evidence that xylan binds in an approximate 3-fold helical conformation., Szabo L, Jamal S, Xie H, Charnock SJ, Bolam DN, Gilbert HJ, Davies GJ, J Biol Chem 2001 Dec 28;276(52):49061-5. PMID:11598143

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (1gny.pdb1.gz) 28 Kb LPC: Ligand-Protein Contacts for 1GNY CSU: Contacts of Structural Units for 1GNY Likely Quarternary Molecular Structure file(s) for 1GNY Structure Factors (148 Kb) Retrieve 1GNY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GNY from S2C, [Save to disk] Re-refined 1gny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GNY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GNY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GNY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gnya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gny_A] [1gny] SWISS-PROT database: [Q59675] Domain organization of [Q59675_9GAMM] by SWISSPFAM

Other resources with information on 1GNY

Community annotation for 1GNY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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