1JEZ Oxidoreductase date Jun 19, 2001
title The Structure Of Xylose Reductase, A Dimeric Aldo-Keto Reduc Candida Tenuis
authors K.L.Kavanagh, M.Klimacek, B.Nidetzky, D.K.Wilson
compound source
Molecule: Xylose Reductase
Chain: A, B
Ec: 1.1.1.21
Engineered: Yes
Organism_scientific: Candida Tenuis
Organism_taxid: 45596
Gene: Xylr
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plamid
Expression_system_plasmid: Pbeact.Li
symmetry Space Group: C 1 2 1
R_factor 0.179 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.840 63.350 103.160 90.00 111.28 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.21 BRENDA
related structures by homologous chain: 1K8C, 1R38
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of apo and holo forms of xylose reductase, a dimeric aldo-keto reductase from Candida tenuis., Kavanagh KL, Klimacek M, Nidetzky B, Wilson DK, Biochemistry 2002 Jul 16;41(28):8785-95. PMID:12102621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (1jez.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 1JEZ
  • Likely Quarternary Molecular Structure file(s) for 1JEZ
  • Retrieve 1JEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JEZ from S2C, [Save to disk]
  • View 1JEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JEZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jeza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jezb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jez] [1jez_A] [1jez_B]
  • SWISS-PROT database: [O74237]
  • Domain organization of [XYL1_CANTE] by SWISSPFAM
  • Other resources with information on 1JEZ
  • Community annotation for 1JEZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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