1L8J Blood Clotting date Mar 20, 2002
title Crystal Structure Of The Endothelial Protein C Receptor And Phospholipid Molecule
authors V.Oganesyan, N.Oganesyan, S.Terzyan, Q.Dongfeng, Z.Dauter, N.L.Es C.T.Esmon
compound source
Molecule: Endothelial Protein C Receptor
Chain: A
Fragment: Extracellular Domain (Residues 18-210)
Synonym: Endothelial Cell Protein C Receptor, Activated Pro Receptor, Apc Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Peehsepcr
symmetry Space Group: P 31 2 1
R_factor 0.195 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.710 69.710 96.210 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand NAG, NDG, PTY enzyme
related structures by homologous chain: 1LQV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of the endothelial protein C receptor and a bound phospholipid., Oganesyan V, Oganesyan N, Terzyan S, Qu D, Dauter Z, Esmon NL, Esmon CT, J Biol Chem 2002 Jul 12;277(28):24851-4. PMID:12034704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1l8j.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1L8J
  • CSU: Contacts of Structural Units for 1L8J
  • Likely Quarternary Molecular Structure file(s) for 1L8J
  • Structure Factors (131 Kb)
  • Retrieve 1L8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L8J from S2C, [Save to disk]
  • Re-refined 1l8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1L8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L8J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L8J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l8ja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l8j_A] [1l8j]
  • SWISS-PROT database: [Q9UNN8]
  • Domain organization of [EPCR_HUMAN] by SWISSPFAM
  • Other resources with information on 1L8J
  • Community annotation for 1L8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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