1MIL Transforming Protein date Sep 20, 1995
title Transforming Protein
authors V.Mikol
compound source
Molecule: Shc Adaptor Protein
Chain: A
Fragment: Phosphotyrosine Recognition Domain Sh2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: T7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: T7
Expression_system_plasmid: T7
Expression_system_gene: T7
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.370 41.550 97.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1TCE
Primary referenceCrystal structure of the SH2 domain from the adaptor protein SHC: a model for peptide binding based on X-ray and NMR data., Mikol V, Baumann G, Zurini MG, Hommel U, J Mol Biol 1995 Nov 17;254(1):86-95. PMID:7473762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1mil.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 1MIL
  • Likely Quarternary Molecular Structure file(s) for 1MIL
  • Retrieve 1MIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MIL from S2C, [Save to disk]
  • View 1MIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1MIL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1MIL, from MSDmotif at EBI
  • Genome occurence of 1MIL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mil__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1mil from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mil] [1mil_A]
  • SWISS-PROT database: [P29353]
  • Domain organization of [SHC1_HUMAN] by SWISSPFAM
  • Domain found in 1MIL: [SH2 ] by SMART
  • Other resources with information on 1MIL
  • Community annotation for 1MIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1MIL from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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