1OZO Metal Binding Protein date Apr 09, 2003
title Three-Dimensional Solution Structure Of Apo-S100p Protein De By Nmr Spectroscopy
authors Y.C.Lee, D.E.Volk, V.Thiviyanathan, Q.Kleerekoper, A.V.Gribenko D.G.Gorenstein, G.I.Makhatadze, B.A.Luxon
compound source
Molecule: S-100p Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: S100p Or S100e
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1J55
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNMR structure of the Apo-S100P protein., Lee YC, Volk DE, Thiviyanathan V, Kleerekoper Q, Gribenko AV, Zhang S, Gorenstein DG, Makhatadze GI, Luxon BA, J Biomol NMR 2004 Jul;29(3):399-402. PMID:15213440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (784 Kb) [Save to disk]
  • Biological Unit Coordinates (1ozo.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1OZO
  • Original NMR restraints for 1OZO from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZO from S2C, [Save to disk]
    • View 1OZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OZO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OZO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ozoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ozob_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ozo] [1ozo_B] [1ozo_A]
  • SWISS-PROT database: [P25815]
  • Domain organization of [S100P_HUMAN] by SWISSPFAM
  • Domain found in 1OZO: [S_100 ] by SMART
    • Other resources with information on 1OZO
  • Community annotation for 1OZO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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