4V4B	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.	date
authors	Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	11.70
note	4V4B supersedes 1S1H, 1S1I
Gene Ontology	Chain Function Process Component AB AC AD cytosolic small ribosomal su... AE AG AH cytosolic small ribosomal su... AI AJ AK AL AM AN AO AQ AS AT B0 cytosolic large ribosomal su... B9 cytosolic large ribosomal su... BA cytosolic large ribosomal su... BB BC cytosolic large ribosomal su... BD cytosolic large ribosomal su... BE BF BG BH BI BJ cytosolic large ribosomal su... BK BL BM BN BO BP BQ BR cytosolic large ribosomal su... BT BU BV cytosolic large ribosomal su... BW BX cytosolic large ribosomal su... BY cytosolic large ribosomal su... BZ cytosolic large ribosomal su...
Primary reference	Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation., Spahn CM, Gomez-Lorenzo MG, Grassucci RA, Jorgensen R, Andersen GR, Beckmann R, Penczek PA, Ballesta JP, Frank J, EMBO J. 2004 Mar 10;23(5):1008-19. Epub 2004 Feb 19. PMID:14976550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (940 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V4B Retrieve 4V4B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V4B from S2C, [Save to disk]

View 4V4B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V4B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v4b] [4v4b_AN] [4v4b_BS] [4v4b_BC] [4v4b_AG] [4v4b_AQ] [4v4b_BD] [4v4b_BH] [4v4b_AM] [4v4b_BZ] [4v4b_BM] [4v4b_AD] [4v4b_BF] [4v4b_BY] [4v4b_AK] [4v4b_BW] [4v4b_AA] [4v4b_AE] [4v4b_B4] [4v4b_AT] [4v4b_BV] [4v4b_BN] [4v4b_BL] [4v4b_BU] [4v4b_BE] [4v4b_BJ] [4v4b_BT] [4v4b_BQ] [4v4b_BI] [4v4b_AO] [4v4b_BG] [4v4b_B9] [4v4b_AS] [4v4b_BO] [4v4b_AH] [4v4b_B0] [4v4b_BA] [4v4b_BR] [4v4b_AL] [4v4b_AJ] [4v4b_AB] [4v4b_BP] [4v4b_BX] [4v4b_B3] [4v4b_AC] [4v4b_BK] [4v4b_AI] [4v4b_BB] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V4B: [EFG_C] [EFG_IV] [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 4V4B

Community annotation for 4V4B at PDBWiki (http://pdbwiki.org)

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