1TCZ Viral Protein date May 21, 2004
title Crystal Structure Of A Truncated Version Of The Phage Lamda Gpd
authors C.Chang, A.Plueckthun, A.Wlodawer
compound source
Molecule: Head Decoration Protein
Chain: A, B, C, D, E, F
Fragment: N-Terminal Truncation
Synonym: Gpd, Major Capsid Protein D
Engineered: Yes
 Organism_scientific: Enterobacteria Phage Lambda
Organism_taxid: 10710
Gene: D
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.186 99.044 59.321 90.00 119.00 90.00
method X-Ray Diffractionresolution 1.85 Å
related structures by homologous chain: 1C5E, 1VD0
Primary referenceCrystal structure of a truncated version of the phage lambda protein gpD., Chang C, Pluckthun A, Wlodawer A, Proteins 2004 Aug 12;57(4):866-868. PMID:15317025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1tcz.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1tcz.pdb2.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1TCZ
  • Likely Quarternary Molecular Structure file(s) for 1TCZ
  • Structure Factors (570 Kb)
  • Retrieve 1TCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TCZ from S2C, [Save to disk]
  • Re-refined 1tcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TCZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TCZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tcza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tczb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1tczc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1tczd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1tcze_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1tczf_, region F [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tcz_D] [1tcz] [1tcz_B] [1tcz_E] [1tcz_C] [1tcz_A] [1tcz_F]
  • SWISS-PROT database: [P03712]
  • Domain organization of [VCAD_LAMBD] by SWISSPFAM
    • Other resources with information on 1TCZ
  • Community annotation for 1TCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science