OCA Atlas for 1TEZ

1TEZ

Lyase Dna

date

May 26, 2004

title

Complex Between Dna And The Dna Photolyase From Anacystis Ni

authors

L.O.Essen, T.Carell, A.Mees, T.Klar

compound

source

Molecule: 5'-D(Aptpcpgpgpcpt(Tcp)Pcpgpc)-3'
Chain: I, K
Engineered: Yes
Other_details: Formacetal Linkage Replaces Phosphate Linkag T7 And T8 Of Chains I And K;

Synthetic: Yes

Molecule: 5'-D(Pcpgpapapgpcpcpgpa)-3'
Chain: J, L
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Tpcpgpc)-3'
Chain: M, O
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Pgpcpcpgpa)-3'
Chain: N, P
Engineered: Yes

Synthetic: Yes

Molecule: Deoxyribodipyrimidine Photolyase
Chain: A, B, C, D
Synonym: Dna Photolyase; Photoreactivating Enzyme
Ec: 4.1.99.3
Engineered: Yes
Other_details: Synthetic Dna Oligonucleotides Engineered As Counterstrand

Organism_scientific: Synechococcus Elongatus
Organism_taxid: 269084
Strain: Pcc 6301
Cellular_location: Cytoplasm
Gene: Phr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a

symmetry

Space Group: C 1 2 1

R_factor

0.205

R_Free

0.226

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
173.815	88.505	161.622	90.00	90.11	90.00

method

X-Ray Diffraction

resolution

1.80 Å

ligand

C, FAD, G, HDF, MG, TCP

enzyme

Lyase E.C.4.1.99.3 BRENDA

related structures

by homologous chain: 1OWO, 1QNF

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B

Primary reference

Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair., Mees A, Klar T, Gnau P, Hennecke U, Eker AP, Carell T, Essen LO, Science 2004 Dec 3;306(5702):1789-93. PMID:15576622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk]

Biological Unit Coordinates (1tez.pdb1.gz) 97 Kb

Biological Unit Coordinates (1tez.pdb2.gz) 97 Kb

Biological Unit Coordinates (1tez.pdb3.gz) 91 Kb

Biological Unit Coordinates (1tez.pdb4.gz) 91 Kb

LPC: Ligand-Protein Contacts for 1TEZ

CSU: Contacts of Structural Units for 1TEZ

Likely Quarternary Molecular Structure file(s) for 1TEZ

Structure Factors (1825 Kb)

Retrieve 1TEZ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1TEZ from S2C, [Save to disk]

Re-refined 1tez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TEZ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TEZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1TEZ, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1teza2, region A:2-204 [Jmol] [rasmolscript] [script source]
- Domain d1teza1, region A:205-475 [Jmol] [rasmolscript] [script source]
- Domain d1tezb2, region B:2-204 [Jmol] [rasmolscript] [script source]
- Domain d1tezb1, region B:205-475 [Jmol] [rasmolscript] [script source]
- Domain d1tezc2, region C:2-204 [Jmol] [rasmolscript] [script source]
- Domain d1tezc1, region C:205-475 [Jmol] [rasmolscript] [script source]
- Domain d1tezd2, region D:2-204 [Jmol] [rasmolscript] [script source]
- Domain d1tezd1, region D:205-475 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tez_N] [1tez_D] [1tez_I] [1tez_M] [1tez_C] [1tez_J] [1tez_O] [1tez_L] [1tez_A] [1tez_P] [1tez_B] [1tez] [1tez_K]

SWISS-PROT database: [P05327]

Domain organization of [PHR_SYNP6] by SWISSPFAM

Other resources with information on 1TEZ

Community annotation for 1TEZ at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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