1TMM Transferase date Jun 10, 2004
title Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a) Wi Mgampcpp And 6-Hydroxymethylpterin
authors J.Blaszczyk, Y.Li, Y.Wu, G.Shi, X.Ji, H.Yan
compound source
Molecule: 2-Amino-4-Hydroxy-6-Hydroxymethyldihydropteridine Pyrophosphokinase;
Chain: A, B
Synonym: 7,8-Dihydro-6-Hydroxymethylpterin-Pyrophosphokinas 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase, Pppk;
Ec: 2.7.6.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Folk, B0142
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.992 47.392 71.438 90.00 104.13 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand ACT, APC, CL, GOL, HHR, MG enzyme Transferase E.C.2.7.6.3 BRENDA
related structures by homologous chain: 1HQ2, 1Q0N
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIs the Critical Role of Loop 3 of Escherichia coli 6-Hydroxymethyl-7,8-dihydropterin Pyrophosphokinase in Catalysis Due to Loop-3 Residues Arginine-84 and Tryptophan-89? Site-Directed Mutagenesis, Biochemical, and Crystallographic Studies(,)., Li Y, Blaszczyk J, Wu Y, Shi G, Ji X, Yan H, Biochemistry 2005 Jun 21;44(24):8590-9. PMID:15952765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1tmm.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (1tmm.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1TMM
  • CSU: Contacts of Structural Units for 1TMM
  • Likely Quarternary Molecular Structure file(s) for 1TMM
  • Structure Factors (1202 Kb)
  • Retrieve 1TMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TMM from S2C, [Save to disk]
  • Re-refined 1tmm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TMM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TMM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tmm] [1tmm_B] [1tmm_A]
  • SWISS-PROT database: [P26281]
  • Domain organization of [HPPK_ECOLI] by SWISSPFAM
  • Other resources with information on 1TMM
  • Community annotation for 1TMM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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