1UP6	Hydrolase	date	Sep 29, 2003
title	Structure Of The 6-Phospho-Beta Glucosidase From Thermotoga At 2.55 Angstrom Resolution In The Tetragonal Form With Man Nad+ And Glucose-6-Phosphate
authors	A.Varrot, V.L.Yip, S.G.Withers, G.J.Davies
compound		source
Molecule: 6-Phospho-Beta-Glucosidase Chain: A, B, C, D, E, F, G, H Ec: 3.2.1.6 Engineered: Yes		Organism_scientific: Thermotoga Maritima Organism_taxid: 243274 Strain: Msb8 Atcc: 43589 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_plasmid: Pet16b Other_details: Synthetic Gene
symmetry	Space Group: P 43 21 2	R_factor 0.200 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 179.438 179.438 282.911 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand	G6P, MN, MSE, NAD, SO4	enzyme	Hydrolase E.C.3.2.1.6 BRENDA
related structures	by homologous chain: 1UP4, 1UP7
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	An unusual mechanism of glycoside hydrolysis involving redox and elimination steps by a family 4 beta-glycosidase from Thermotoga maritima., Yip VL, Varrot A, Davies GJ, Rajan SS, Yang X, Thompson J, Anderson WF, Withers SG, J Am Chem Soc. 2004 Jul 14;126(27):8354-5. PMID:15237973

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (534 Kb) [Save to disk] Biological Unit Coordinates (1up6.pdb1.gz) 273 Kb Biological Unit Coordinates (1up6.pdb2.gz) 257 Kb LPC: Ligand-Protein Contacts for 1UP6 CSU: Contacts of Structural Units for 1UP6 Likely Quarternary Molecular Structure file(s) for 1UP6 Structure Factors (3902 Kb) Retrieve 1UP6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1UP6 from S2C, [Save to disk] Re-refined 1up6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1UP6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1UP6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1UP6, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1up6a2, region A:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6a1, region A:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6b2, region B:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6b1, region B:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6c2, region C:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6c1, region C:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6d2, region D:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6d1, region D:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6e2, region E:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6e1, region E:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6f2, region F:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6f1, region F:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6g2, region G:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6g1, region G:2-162 [Jmol] [rasmolscript] [script source]     - Domain d1up6h2, region H:163-415 [Jmol] [rasmolscript] [script source]     - Domain d1up6h1, region H:2-162 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1up6_G] [1up6_F] [1up6_D] [1up6_H] [1up6] [1up6_A] [1up6_E] [1up6_C] [1up6_B] SWISS-PROT database: [Q9X108] Domain organization of [BGLT_THEMA] by SWISSPFAM

Other resources with information on 1UP6

Community annotation for 1UP6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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