4V4O Crystal Structure of the Chaperonin Complex Cpn60/Cpn10/(ADP)7 from Thermus Thermophilus date
authors Shimamura, T., Koike-Takeshita, A., Yokoyama, K., Masui, R., Murai, N., Yoshida, M., Taguchi, H., Iwata, S.
compound source
symmetry
R_factor
R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
note 4V4O supersedes 1WE3, 1WF4
Gene
Ontology
ChainFunctionProcessComponent
S, T, u, t, s, q, U, r, Q, O, P, p, R, o


a, N, K, d, E, j, k, g, e, J, B, H, c, b, D, I, G, F, M, h, C, L, f, i, A, n, m, l


Primary referenceCrystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity., Shimamura T, Koike-Takeshita A, Yokoyama K, Masui R, Murai N, Yoshida M, Taguchi H, Iwata S, Structure. 2004 Aug;12(8):1471-80. PMID:15296740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1940 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4O
  • Structure Factors (3836 Kb)
  • Retrieve 4V4O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4O from S2C, [Save to disk]
    • View 4V4O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V4O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4o] [4v4o_s] [4v4o_p] [4v4o_f] [4v4o_O] [4v4o_j] [4v4o_m] [4v4o_e] [4v4o_d] [4v4o_n] [4v4o_b] [4v4o_A] [4v4o_G] [4v4o_c] [4v4o_S] [4v4o_F] [4v4o_t] [4v4o_C] [4v4o_g] [4v4o_H] [4v4o_J] [4v4o_h] [4v4o_T] [4v4o_E] [4v4o_r] [4v4o_i] [4v4o_I] [4v4o_Q] [4v4o_u] [4v4o_D] [4v4o_B] [4v4o_l] [4v4o_N] [4v4o_L] [4v4o_R] [4v4o_a] [4v4o_P] [4v4o_q] [4v4o_k] [4v4o_o] [4v4o_U] [4v4o_K] [4v4o_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4V4O: [Cpn10 ] by SMART
    • Other resources with information on 4V4O
  • Community annotation for 4V4O at PDBWiki (http://pdbwiki.org)

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