1AOI COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT date
authors Luger, K., Maeder, A.W., Richmond, R.K., Sargent, D.F., Richmond, T.J.
compound source
symmetry
R_factor
R_Free 0.3020000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand MN enzyme
note 1AOI (Molecule of the Month:pdb7)
related structures by homologous chain: 1P3M, 1P3O
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceCrystal structure of the nucleosome core particle at 2.8 A resolution., Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ, Nature 1997 Sep 18;389(6648):251-60. PMID:9305837
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (1aoi.pdb1.gz) 226 Kb
  • LPC: Ligand-Protein Contacts for 1AOI
  • CSU: Contacts of Structural Units for 1AOI
  • Likely Quarternary Molecular Structure file(s) for 1AOI
  • Retrieve 1AOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AOI from S2C, [Save to disk]
  • View 1AOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1AOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AOI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aoia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1aoib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1aoic_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1aoid_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1aoie_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1aoif_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1aoig_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1aoih_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aoi_E] [1aoi_I] [1aoi_A] [1aoi_H] [1aoi_D] [1aoi_B] [1aoi_J] [1aoi_G] [1aoi_C] [1aoi_F] [1aoi]
  • SWISS-PROT database: [P06897] [P02281] [P02302] [P62799]
  • Domain organization of [H2A1_XENLA] [H2B11_XENLA] [H3L_XENLA] [H4_XENLA] by SWISSPFAM
  • Domains found in 1AOI: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 1AOI
  • Community annotation for 1AOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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