1D0D	CRYSTAL STRUCTURE OF TICK ANTICOAGULANT PROTEIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR	date
authors	St.Charles, R., Padmanabhan, K., Arni, R.V., Padmanabhan, K.P., Tulinsky, A.
compound		source
symmetry		R_factor R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.62
ligand	SO4	enzyme
note	1D0D is a representative structure
related structures	by homologous chain: 1F5R, 1KIG, 1P2K
Gene Ontology	Chain Function Process Component A serine-type endopeptidase in... B
Primary reference	Structure of tick anticoagulant peptide at 1.6 A resolution complexed with bovine pancreatic trypsin inhibitor., St Charles R, Padmanabhan K, Arni RV, Padmanabhan KP, Tulinsky A, Protein Sci 2000 Feb;9(2):265-72. PMID:10716178

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk] Biological Unit Coordinates (1d0d.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 1D0D CSU: Contacts of Structural Units for 1D0D Likely Quarternary Molecular Structure file(s) for 1D0D Retrieve 1D0D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D0D from S2C, [Save to disk]

View 1D0D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D0D

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1D0D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d0da_, region A [Jmol] [rasmolscript] [script source]     - Domain d1d0db_, region B [Jmol] [rasmolscript] [script source] Fold representative 1d0d from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d0d] [1d0d_A] [1d0d_B] SWISS-PROT database: [P00974] [P17726] Domain organization of [BPT1_BOVIN] [TAP_ORNMO] by SWISSPFAM Domain found in 1D0D: [KU ] by SMART

Other resources with information on 1D0D

Community annotation for 1D0D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1D0D from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---