1D1J Contractile Protein date Sep 17, 1999
title Crystal Structure Of Human Profilin II
authors I.M.Nodelman, G.D.Bowman, U.Lindberg, C.E.Schutt
compound source
Molecule: Profilin II
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3d
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.140 44.800 89.600 90.00 98.59 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand PG5, PG6, SO4 enzyme
related structures by homologous chain: 1CF0, 1FIK
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceX-ray structure determination of human profilin II: A comparative structural analysis of human profilins., Nodelman IM, Bowman GD, Lindberg U, Schutt CE, J Mol Biol 1999 Dec 17;294(5):1271-85. PMID:10600384
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1d1j.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1D1J
  • CSU: Contacts of Structural Units for 1D1J
  • Likely Quarternary Molecular Structure file(s) for 1D1J
  • Structure Factors (231 Kb)
  • Retrieve 1D1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D1J from S2C, [Save to disk]
  • Re-refined 1d1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1D1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1D1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D1J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d1ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1d1jb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1d1jc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1d1jd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d1j_B] [1d1j_D] [1d1j_C] [1d1j] [1d1j_A]
  • SWISS-PROT database: [P35080]
  • Domain organization of [PROF2_HUMAN] by SWISSPFAM
  • Domain found in 1D1J: [PROF ] by SMART
  • Other resources with information on 1D1J
  • Community annotation for 1D1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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