1DOI Electron Transport date Apr 08, 1996
title 2fe-2s Ferredoxin From Haloarcula Marismortui
authors F.Frolow, M.Harel, J.L.Sussman, M.Shoham
compound source
Molecule: 2fe-2s Ferredoxin
Chain: A
Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
symmetry Space Group: P 63 2 2
R_factor 0.195 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
59.180 59.180 124.230 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand FES, K enzyme
note 1DOI is a representative structure
related structures by homologous chain: 1E10
  • electron transfer activity

  • Primary referenceInsights into protein adaptation to a saturated salt environment from the crystal structure of a halophilic 2Fe-2S ferredoxin., Frolow F, Harel M, Sussman JL, Mevarech M, Shoham M, Nat Struct Biol 1996 May;3(5):452-8. PMID:8612076
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1doi.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1DOI
  • CSU: Contacts of Structural Units for 1DOI
  • Likely Quarternary Molecular Structure file(s) for 1DOI
  • Structure Factors (76 Kb)
  • Retrieve 1DOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOI from S2C, [Save to disk]
  • Re-refined 1doi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DOI, from MSDmotif at EBI
  • Genome occurence of 1DOI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1doi__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1doi] [1doi_A]
  • SWISS-PROT database: [P00217]
  • Domain organization of [FER1_HALMA] by SWISSPFAM
  • Other resources with information on 1DOI
  • Community annotation for 1DOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1DOI from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science