1EHZ Rna date Feb 23, 2000
title The Crystal Structure Of Yeast Phenylalanine Trna At 1.93 A
authors H.Shi, P.B.Moore
compound source
Molecule: Transfer Rna (Phe)
Chain: A
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Other_details: Abundant Form, Purified From The Natural Mix Electrophoresis
symmetry Space Group: P 1 21 1
R_factor 0.233 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.981 33.389 61.921 90.00 90.20 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand 1MA, 2MG, 5MC, 5MU, 7MG, H2U, M2G, MG, MN, OMC, OMG, PSU, YYG enzyme
Primary referenceThe crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited., Shi H, Moore PB, RNA 2000 Aug;6(8):1091-105. PMID:10943889
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1ehz.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1EHZ
  • CSU: Contacts of Structural Units for 1EHZ
  • Likely Quarternary Molecular Structure file(s) for 1EHZ
  • Structure Factors (246 Kb)
  • Retrieve 1EHZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EHZ from S2C, [Save to disk]
  • Re-refined 1ehz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EHZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EHZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EHZ, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 1ehz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ehz] [1ehz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1EHZ
  • Community annotation for 1EHZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science