1EWJ Antibiotic Inhibitor date Apr 26, 2000
title Crystal Structure Of Bleomycin-Binding Protein Complexed With Bleomycin
authors M.Maruyama, T.Kumagai, Y.Matoba, Y.Hata, M.Sugiyama
compound source
Molecule: Bleomycin Resistance Determinant
Chain: A, B, C, D, E, F, G, H
Fragment: Core Domain
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Transposon Tn5
Expression_system: Streptomyces Verticillus
Expression_system_taxid: 29309
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkktrp
Other_details: Culture Broth
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.270 117.000 79.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BLM enzyme
related structures by homologous chain: 1ECS, 1MH6
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structures of the transposon Tn5-carried bleomycin resistance determinant uncomplexed and complexed with bleomycin., Maruyama M, Kumagai T, Matoba Y, Hayashida M, Fujii T, Hata Y, Sugiyama M, J Biol Chem 2001 Mar 30;276(13):9992-9. PMID:11134052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (1ewj.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1ewj.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (1ewj.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (1ewj.pdb4.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1EWJ
  • CSU: Contacts of Structural Units for 1EWJ
  • Likely Quarternary Molecular Structure file(s) for 1EWJ
  • Retrieve 1EWJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EWJ from S2C, [Save to disk]
  • View 1EWJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EWJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1EWJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ewja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ewjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ewjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ewjd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1ewje_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1ewjf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1ewjg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1ewjh_, region H [Jmol] [rasmolscript] [script source]
  • Fold representative 1ewj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ewj_B] [1ewj_E] [1ewj_G] [1ewj_H] [1ewj] [1ewj_C] [1ewj_F] [1ewj_D] [1ewj_A]
  • SWISS-PROT database: [P13081]
  • Domain organization of [BLE_KLEPN] by SWISSPFAM
  • Other resources with information on 1EWJ
  • Community annotation for 1EWJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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