1GGX	Luminescent Protein	date	Oct 05, 2000
title	Red Fluorescent Protein (Fp583 Or Dsred(Clontech)) From Disc
authors	M.A.Wall, M.A.Socolich, R.Ranganathan
compound		source
Molecule: Protein (Fluorescent Protein Fp583) Chain: A, B, C, D Synonym: Rfp Engineered: Yes Other_details: Residue Crq 68 Is Made From Residues Gln 66, And Gly 68.		Organism_scientific: Discosoma Sp. Organism_taxid: 86600 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 (De3) Expression_system_cellular_location: Cytoplasm Expression_system_vector: Plasmid Expression_system_plasmid: Prsetb Expression_system_gene: Dsred
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.206 129.621 57.441 90.00 99.15 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CRQ	enzyme
related structures	by homologous chain: 1G7K
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The structural basis for red fluorescence in the tetrameric GFP homolog DsRed., Wall MA, Socolich M, Ranganathan R, Nat Struct Biol 2000 Dec;7(12):1133-8. PMID:11101896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (1ggx.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 1GGX CSU: Contacts of Structural Units for 1GGX Likely Quarternary Molecular Structure file(s) for 1GGX Structure Factors (1015 Kb) Retrieve 1GGX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GGX from S2C, [Save to disk] Re-refined 1ggx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GGX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GGX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GGX, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ggxa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ggxb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1ggxc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1ggxd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ggx_D] [1ggx_B] [1ggx_A] [1ggx] [1ggx_C] SWISS-PROT database: [Q9U6Y8] Domain organization of [RFP_DISSP] by SWISSPFAM

Other resources with information on 1GGX

Community annotation for 1GGX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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