1GK8 Lyase date Aug 09, 2001
title Rubisco From Chlamydomonas Reinhardtii
authors T.C.Taylor
compound source
Molecule: Ribulose-1,5 Bisphosphate Carboxylase Large Chain
Chain: A, C, E, G
Synonym: Rubisco Large Subunit
Ec: 4.1.1.39
Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055

Molecule: Ribulose Bisphosphate Carboxylase Small Chain 1
Chain: I, K, M, O
Synonym: Rubisco Small Subunit 1
Ec: 4.1.1.39

Organism_scientific: Chlamydomonas Reinhardtii
Organism_taxid: 3055
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.375 142.638 124.717 90.00 124.13 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CAP, EDO, HYP, KCX, MG, MME, SMC enzyme Lyase E.C.4.1.1.39 BRENDA
note 1GK8 is a representative structure
related structures by homologous chain: 1IR2, 1WDD, 8RUC
Gene
Ontology
ChainFunctionProcessComponent
A, C, G, E


Primary referenceFirst crystal structure of Rubisco from a green alga, Chlamydomonas reinhardtii., Taylor TC, Backlund A, Bjorhall K, Spreitzer RJ, Andersson I, J Biol Chem. 2001 Dec 21;276(51):48159-64. Epub 2001 Oct 18. PMID:11641402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (441 Kb) [Save to disk]
  • Biological Unit Coordinates (1gk8.pdb1.gz) 853 Kb
  • LPC: Ligand-Protein Contacts for 1GK8
  • CSU: Contacts of Structural Units for 1GK8
  • Likely Quarternary Molecular Structure file(s) for 1GK8
  • Structure Factors (3628 Kb)
  • Retrieve 1GK8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GK8 from S2C, [Save to disk]
  • Re-refined 1gk8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GK8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GK8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1GK8 1GK8A 1GK8C 1GK8E 1GK8G 1GK8I 1GK8K 1GK8M 1GK8O from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GK8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gk8a1, region A:150-475 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8a2, region A:7-149 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8c1, region C:150-475 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8c2, region C:7-149 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8e2, region E:11-149 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8e1, region E:150-475 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8g1, region G:150-475 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8g2, region G:9-149 [Jmol] [rasmolscript] [script source]
        - Domain d1gk8i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1gk8k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1gk8m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1gk8o_, region O [Jmol] [rasmolscript] [script source]
  • Fold representative 1gk8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gk8_A] [1gk8_I] [1gk8_E] [1gk8_O] [1gk8_K] [1gk8] [1gk8_M] [1gk8_G] [1gk8_C]
  • SWISS-PROT database: [P00877] [P00873]
  • Domain organization of [RBL_CHLRE] [RBS1_CHLRE] by SWISSPFAM
  • Domain found in 1GK8: [RuBisCO_small ] by SMART
  • Other resources with information on 1GK8
  • Community annotation for 1GK8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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