1GU1 Lyase date Jan 22, 2002
title Crystal Structure Of Type II Dehydroquinase From Streptomyce Coelicolor Complexed With 2,3-Anhydro-Quinic Acid
authors A.W.Roszak, D.A.Robinson, T.Krell, I.S.Hunter, J.R.Coggins, A.J.L
compound source
Molecule: 3-Dehydroquinate Dehydratase
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Type II 3-Dehydroquinate Hydratase, 3-Dehydroquina II Dhqase;
Ec: 4.2.1.10
Engineered: Yes
Organism_scientific: Streptomyces Coelicolor
Organism_taxid: 1902
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Ptb361
Expression_system_plasmid: Pdhq
symmetry Space Group: P 21 21 21
R_factor 0.155 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.600 138.400 141.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FA1, GOL, TLA, TRS BindingDB enzyme Lyase E.C.4.2.1.10 BRENDA
related structures by homologous chain: 1D0I, 1GTZ
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceThe structure and mechanism of the type II dehydroquinase from Streptomyces coelicolor., Roszak AW, Robinson DA, Krell T, Hunter IS, Fredrickson M, Abell C, Coggins JR, Lapthorn AJ, Structure (Camb) 2002 Apr;10(4):493-503. PMID:11937054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (647 Kb) [Save to disk]
  • Biological Unit Coordinates (1gu1.pdb1.gz) 638 Kb
  • LPC: Ligand-Protein Contacts for 1GU1
  • CSU: Contacts of Structural Units for 1GU1
  • Likely Quarternary Molecular Structure file(s) for 1GU1
  • Retrieve 1GU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GU1 from S2C, [Save to disk]
  • View 1GU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GU1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GU1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gu1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gu1b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1gu1c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1gu1d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1gu1e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1gu1f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1gu1g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1gu1h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1gu1i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1gu1j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1gu1k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1gu1l_, region L [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gu1_H] [1gu1_F] [1gu1_C] [1gu1_G] [1gu1_I] [1gu1_B] [1gu1_L] [1gu1_E] [1gu1_K] [1gu1] [1gu1_J] [1gu1_D] [1gu1_A]
  • SWISS-PROT database: [P15474]
  • Domain organization of [AROQ_STRCO] by SWISSPFAM
  • Other resources with information on 1GU1
  • Community annotation for 1GU1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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