1I3J CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF INTRON ENDONUCLEASE I-TEVI WITH ITS SUBSTRATE date
authors Roey, P.Van., Waddling, C.A., Fox, K.M., Belfort, M., Derbyshire, V.
compound source
symmetry
R_factor
R_Free 0.2480000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand ZN enzyme
related structures by homologous chain: 1T2T
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntertwined structure of the DNA-binding domain of intron endonuclease I-TevI with its substrate., Van Roey P, Waddling CA, Fox KM, Belfort M, Derbyshire V, EMBO J 2001 Jul 16;20(14):3631-7. PMID:11447104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1i3j.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1I3J
  • CSU: Contacts of Structural Units for 1I3J
  • Likely Quarternary Molecular Structure file(s) for 1I3J
  • Structure Factors (112 Kb)
  • Retrieve 1I3J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I3J from S2C, [Save to disk]
  • Re-refined 1i3j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1I3J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I3J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1I3J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i3ja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1i3j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i3j] [1i3j_C] [1i3j_A] [1i3j_B]
  • SWISS-PROT database: [P13299]
  • Domain organization of [TEV1_BPT4] by SWISSPFAM
  • Domain found in 1I3J: [IENR2 ] by SMART
  • Other resources with information on 1I3J
  • Community annotation for 1I3J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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