1KHI CRYSTAL STRUCTURE OF HEX1 date
authors Yuan, P., Swaminathan, K.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.78
Gene
Ontology
ChainFunctionProcessComponent
A
  • translation elongation facto...


  • Primary referenceA HEX-1 crystal lattice required for Woronin body function in Neurospora crassa., Yuan P, Jedd G, Kumaran D, Swaminathan S, Shio H, Hewitt D, Chua NH, Swaminathan K, Nat Struct Biol 2003 Apr;10(4):264-70. PMID:12640443
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1khi.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1KHI
  • Likely Quarternary Molecular Structure file(s) for 1KHI
  • Structure Factors (126 Kb)
  • Retrieve 1KHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KHI from S2C, [Save to disk]
  • Re-refined 1khi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KHI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1KHI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1khia2, region A:103-173 [Jmol] [rasmolscript] [script source]
        - Domain d1khia1, region A:27-102 [Jmol] [rasmolscript] [script source]
  • Fold representative 1khi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1khi] [1khi_A]
  • SWISS-PROT database: [P87252]
  • Domain organization of [HEX1_NEUCR] by SWISSPFAM
  • Other resources with information on 1KHI
  • Community annotation for 1KHI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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