1KVP STRUCTURAL ANALYSIS OF THE SPIROPLASMA VIRUS, SPV4, IMPLICATIONS FOR EVOLUTIONARY VARIATION TO OBTAIN HOST DIVERSITY AMONG THE MICROVIRIDAE, ELECTRON MICROSCOPY, ALPHA CARBONS ONLY date
authors McKenna, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 27.00
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the Spiroplasma virus, SpV4: implications for evolutionary variation to obtain host diversity among the Microviridae., Chipman PR, Agbandje-McKenna M, Renaudin J, Baker TS, McKenna R, Structure 1998 Feb 15;6(2):135-45. PMID:9519405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1kvp.pdb1.gz) 543 Kb
  • CSU: Contacts of Structural Units for 1KVP
  • Likely Quarternary Molecular Structure file(s) for 1KVP
  • Retrieve 1KVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KVP from S2C, [Save to disk]
  • View 1KVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KVP
  • VIPERdb: visual, structural and computational analysis of 1KVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KVP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kvp__, region [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kvp] [1kvp_A]
  • SWISS-PROT database: [P03641] [P11333]
  • Domain organization of [F_BPPHX] [F_SPV4] by SWISSPFAM
  • Other resources with information on 1KVP
  • Community annotation for 1KVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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