1KWV Rat mannose binding protein A complexed with a-Me-GlcNAc date
authors Ng, K.K., Kolatkar, A.R., Park-Snyder, S., Feinberg, H., Clark, D.A., Drickamer, K., Weis, W.I.
compound source
symmetry
R_factor
R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA, CL, NAG enzyme
related structures by homologous chain: 1BCH, 4KMB
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceOrientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition., Ng KK, Kolatkar AR, Park-Snyder S, Feinberg H, Clark DA, Drickamer K, Weis WI, J Biol Chem 2002 May 3;277(18):16088-95. PMID:11850428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1kwv.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 1KWV
  • CSU: Contacts of Structural Units for 1KWV
  • Likely Quarternary Molecular Structure file(s) for 1KWV
  • Structure Factors (428 Kb)
  • Retrieve 1KWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KWV from S2C, [Save to disk]
  • Re-refined 1kwv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KWV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KWV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kwva1, region A:105-221 [Jmol] [rasmolscript] [script source]
        - Domain d1kwva2, region A:73-104 [Jmol] [rasmolscript] [script source]
        - Domain d1kwvb1, region B:105-221 [Jmol] [rasmolscript] [script source]
        - Domain d1kwvb2, region B:73-104 [Jmol] [rasmolscript] [script source]
        - Domain d1kwvc1, region C:105-221 [Jmol] [rasmolscript] [script source]
        - Domain d1kwvc2, region C:73-104 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kwv] [1kwv_C] [1kwv_A] [1kwv_B]
  • SWISS-PROT database: [P19999]
  • Domain organization of [MBL1_RAT] by SWISSPFAM
  • Domain found in 1KWV: [CLECT ] by SMART
  • Other resources with information on 1KWV
  • Community annotation for 1KWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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