1L6O XENOPUS DISHEVELLED PDZ DOMAIN date
authors Cheyette, B.N.R., Waxman, J.S., Miller, J.R., Takemaru, K.I., Sheldahl, L.C., Khlebtsova, N., Fox, E.P., Earnest, T., Moon, R.T.
compound source
symmetry
R_factor
R_Free 0.32316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDapper, a Dishevelled-associated antagonist of beta-catenin and JNK signaling, is required for notochord formation., Cheyette BN, Waxman JS, Miller JR, Takemaru K, Sheldahl LC, Khlebtsova N, Fox EP, Earnest T, Moon RT, Dev Cell 2002 Apr;2(4):449-61. PMID:11970895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1l6o.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1L6O
  • CSU: Contacts of Structural Units for 1L6O
  • Likely Quarternary Molecular Structure file(s) for 1L6O
  • Retrieve 1L6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L6O from S2C, [Save to disk]
  • View 1L6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L6O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L6O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l6oa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l6ob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1l6oc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l6o_F] [1l6o_D] [1l6o_B] [1l6o_E] [1l6o_C] [1l6o] [1l6o_A]
  • SWISS-PROT database: [P51142]
  • Domain organization of [DVL2_XENLA] by SWISSPFAM
  • Domain found in 1L6O: [PDZ ] by SMART
  • Other resources with information on 1L6O
  • Community annotation for 1L6O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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