1LII STRUCTURE OF T. GONDII ADENOSINE KINASE BOUND TO ADENOSINE 2 AND AMP-PCP date
authors Schumacher, M.A., Scott, D.M., Mathews, I.I., Ealick, S.E., Roos, D.S., Ullman, B., Brennan, R.G.
compound source
symmetry
R_factor
R_Free 0.2250000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.73
ligand ACP, ADN, CL, MG enzyme
note 1LII supersedes 1DGY
related structures by homologous chain: 1DGM
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Toxoplasma gondii adenosine kinase reveal a novel catalytic mechanism and prodrug binding., Schumacher MA, Scott DM, Mathews II, Ealick SE, Roos DS, Ullman B, Brennan RG, J Mol Biol 2000 May 19;298(5):875-93. PMID:10801355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1lii.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1LII
  • CSU: Contacts of Structural Units for 1LII
  • Likely Quarternary Molecular Structure file(s) for 1LII
  • Retrieve 1LII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LII from S2C, [Save to disk]
  • View 1LII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LII
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LII, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1liia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lii] [1lii_A]
  • SWISS-PROT database: [Q9TVW2]
  • Domain organization of [ADK_TOXGO] by SWISSPFAM
  • Other resources with information on 1LII
  • Community annotation for 1LII at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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