1LRI Toxin date May 15, 2002
title Beta-Cryptogein-Cholesterol Complex
authors M.B.Lascombe, M.Ponchet, P.Venard, M.L.Milat, J.P.Blein, T.Prange
compound source
Molecule: Beta-Elicitin Cryptogein
Chain: A
Synonym: Fungal Elicitor Cryptogein, Cry
Organism_scientific: Phytophthora Cryptogea
Organism_taxid: 4786
symmetry Space Group: C 2 2 21
length a length b length c angle alpha angle beta angle gamma
30.964 94.800 65.296 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CL, CLR enzyme
related structures by homologous chain: 1LJP

Primary referenceThe 1.45 A resolution structure of the cryptogein-cholesterol complex: a close-up view of a sterol carrier protein (SCP) active site., Lascombe MB, Ponchet M, Venard P, Milat ML, Blein JP, Prange T, Acta Crystallogr D Biol Crystallogr 2002 Sep;58(Pt 9):1442-7. PMID:12198300
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1lri.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1LRI
  • CSU: Contacts of Structural Units for 1LRI
  • Likely Quarternary Molecular Structure file(s) for 1LRI
  • Structure Factors (144 Kb)
  • Retrieve 1LRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LRI from S2C, [Save to disk]
  • Re-refined 1lri structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LRI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LRI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lria_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1lri from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lri_A] [1lri]
  • SWISS-PROT database: [P15570]
  • Domain organization of [ELIB_PHYCR] by SWISSPFAM
  • Domain found in 1LRI: [Elicitin ] by SMART
  • Other resources with information on 1LRI
  • Community annotation for 1LRI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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