1OLN Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA date
authors Lentzen, G., Klinck, R., Matassova, N., Aboul-Ela, F., Murchie, A.I.H.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BB9, DBU, DCY, DHA, MH6, NH2, QUA, TS9 enzyme
related structures by homologous chain: 1JQM, 1QA6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for contrasting activities of ribosome binding thiazole antibiotics., Lentzen G, Klinck R, Matassova N, Aboul-ela F, Murchie AI, Chem Biol 2003 Aug;10(8):769-78. PMID:12954336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1oln.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1OLN
  • CSU: Contacts of Structural Units for 1OLN
  • Retrieve 1OLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OLN from S2C, [Save to disk]
  • View 1OLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OLN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OLN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1olna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1olnb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1olnc_, region C [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oln_C] [1oln] [1oln_B] [1oln_A]
  • SWISS-PROT database: [P29395] [P0C8P8]
  • Domain organization of [RL11_THEMA] [THCL_STRAJ] by SWISSPFAM
  • Domain found in 1OLN: [RL11 ] by SMART
  • Other resources with information on 1OLN
  • Community annotation for 1OLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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