1P9X THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC date
authors Berisio R, Fucini P, Hansen HA, Harms J, Schluenzen F, Yonath A, Zarivach R
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand TEL enzyme
Primary referenceStructural insight into the antibiotic action of telithromycin against resistant mutants., Berisio R, Harms J, Schluenzen F, Zarivach R, Hansen HA, Fucini P, Yonath A, J Bacteriol 2003 Jul;185(14):4276-9. PMID:12837804
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1030 Kb) [Save to disk]
  • Biological Unit Coordinates (1p9x.pdb1.gz) 1007 Kb
  • LPC: Ligand-Protein Contacts for 1P9X
  • CSU: Contacts of Structural Units for 1P9X
  • Likely Quarternary Molecular Structure file(s) for 1P9X
  • Retrieve 1P9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P9X from S2C, [Save to disk]
  • View 1P9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P9X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P9X, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p9x0_, region 0 [Jmol] [rasmolscript] [script source]
  • Fold representative 1p9x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p9x] [1p9x_0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1P9X
  • Community annotation for 1P9X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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