1R6J Ultrahigh resolution Crystal Structure of syntenin PDZ2 date
authors Kang, B.S., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.
compound source
symmetry
R_factor
R_Free 0.0866
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.73
ligand CL enzyme
note 1R6J is a representative structure
related structures by homologous chain: 1NTE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe PDZ2 domain of syntenin at ultra-high resolution: bridging the gap between macromolecular and small molecule crystallography., Kang BS, Devedjiev Y, Derewenda U, Derewenda ZS, J Mol Biol 2004 Apr 30;338(3):483-93. PMID:15081807
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1r6j.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 1R6J
  • CSU: Contacts of Structural Units for 1R6J
  • Likely Quarternary Molecular Structure file(s) for 1R6J
  • Structure Factors (779 Kb)
  • Retrieve 1R6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R6J from S2C, [Save to disk]
  • Re-refined 1r6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1R6J from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R6J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r6ja_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r6j_A] [1r6j]
  • SWISS-PROT database: [O00560]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [SDCB1_HUMAN] by SWISSPFAM
  • Domain found in 1R6J: [PDZ ] by SMART
  • Other resources with information on 1R6J
  • Community annotation for 1R6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science