1RJO Oxidoreductase date Nov 19, 2003
title Agao + Xe
authors J.M.Guss, D.M.Trambaiolo, A.P.Duff
compound source
Molecule: Phenylethylamine Oxidase
Chain: A
Synonym: Amine Oxidase, Copper Amine Oxidase, Agao
Ec: 1.4.3.6
Engineered: Yes
Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pagao2
symmetry Space Group: C 1 2 1
R_factor 0.157 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.009 63.189 92.149 90.00 112.09 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand CU, GOL, NA, SO4, TPQ, XE enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
related structures by homologous chain: 1SII
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUsing xenon as a probe for dioxygen-binding sites in copper amine oxidases., Duff AP, Trambaiolo DM, Cohen AE, Ellis PJ, Juda GA, Shepard EM, Langley DB, Dooley DM, Freeman HC, Guss JM, J Mol Biol 2004 Nov 26;344(3):599-607. PMID:15533431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1rjo.pdb1.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 1RJO
  • CSU: Contacts of Structural Units for 1RJO
  • Likely Quarternary Molecular Structure file(s) for 1RJO
  • Structure Factors (1161 Kb)
  • Retrieve 1RJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJO from S2C, [Save to disk]
  • Re-refined 1rjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RJO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjoa1, region A:212-628 [Jmol] [rasmolscript] [script source]
        - Domain d1rjoa2, region A:9-96 [Jmol] [rasmolscript] [script source]
        - Domain d1rjoa3, region A:97-211 [Jmol] [rasmolscript] [script source]
  • Fold representative 1rjo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rjo_A] [1rjo]
  • SWISS-PROT database: [P46881]
  • Domain organization of [PAOX_ARTGO] by SWISSPFAM
  • Other resources with information on 1RJO
  • Community annotation for 1RJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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