1T0P Structural Basis of ICAM recognition by integrin alpahLbeta2 revealed in the complex structure of binding domains of ICAM-3 and alphaLbeta2 at 1.65 A date
authors Song, G., Yang, Y.T., Liu, J.H., Shimaoko, M., Springer, T.A., Wang, J.H.
compound source
symmetry
R_factor
R_Free 0.2413
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.66
ligand MG, NAG enzyme
related structures by homologous chain: 1LFA, 1MJN
Primary referenceAn atomic resolution view of ICAM recognition in a complex between the binding domains of ICAM-3 and integrin alphaLbeta2., Song G, Yang Y, Liu JH, Casasnovas JM, Shimaoka M, Springer TA, Wang JH, Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3366-71. Epub 2005 Feb 22. PMID:15728350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1t0p.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 1T0P
  • CSU: Contacts of Structural Units for 1T0P
  • Likely Quarternary Molecular Structure file(s) for 1T0P
  • Structure Factors (287 Kb)
  • Retrieve 1T0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T0P from S2C, [Save to disk]
  • Re-refined 1t0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T0P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t0p_A] [1t0p] [1t0p_B]
  • SWISS-PROT database: [P32942] [P20701]
  • Domain organization of [ICAM3_HUMAN] [ITAL_HUMAN] by SWISSPFAM
  • Domain found in 1T0P: [VWA ] by SMART
  • Other resources with information on 1T0P
  • Community annotation for 1T0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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