1TYE Structural basis for allostery in integrins and binding of ligand-mimetic therapeutics to the platelet receptor for fibrinogen date
authors Xiao, T., Takagi, J., Coller, B.S., Wang, J.H., Springer, T.A.
compound source
R_Free 0.254
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand BMA, CA, CAC, MAN, MG, NAG enzyme
related structures by homologous chain: 1TY5
A, C, E

F, D, B

Primary referenceStructural basis for allostery in integrins and binding to fibrinogen-mimetic therapeutics., Xiao T, Takagi J, Coller BS, Wang JH, Springer TA, Nature 2004 Sep 19;. PMID:15378069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (431 Kb) [Save to disk]
  • Biological Unit Coordinates (1tye.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (1tye.pdb2.gz) 146 Kb
  • Biological Unit Coordinates (1tye.pdb3.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 1TYE
  • CSU: Contacts of Structural Units for 1TYE
  • Likely Quarternary Molecular Structure file(s) for 1TYE
  • Structure Factors (955 Kb)
  • Retrieve 1TYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TYE from S2C, [Save to disk]
  • Re-refined 1tye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TYE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TYE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tyea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tyeb3, region B:1-57 [Jmol] [rasmolscript] [script source]
        - Domain d1tyeb2, region B:107-354 [Jmol] [rasmolscript] [script source]
        - Domain d1tyeb1, region B:58-106,B:355-440 [Jmol] [rasmolscript] [script source]
        - Domain d1tyec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1tyed3, region D:1-57 [Jmol] [rasmolscript] [script source]
        - Domain d1tyed2, region D:107-354 [Jmol] [rasmolscript] [script source]
        - Domain d1tyed1, region D:58-106,D:355-440 [Jmol] [rasmolscript] [script source]
        - Domain d1tyee_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1tyef3, region F:1-57 [Jmol] [rasmolscript] [script source]
        - Domain d1tyef2, region F:107-354 [Jmol] [rasmolscript] [script source]
        - Domain d1tyef1, region F:58-106,F:355-440 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tye_C] [1tye_A] [1tye_B] [1tye] [1tye_E] [1tye_D] [1tye_F]
  • SWISS-PROT database: [P08514] [P05106]
  • Domain organization of [ITA2B_HUMAN] [ITB3_HUMAN] by SWISSPFAM
  • Domains found in 1TYE: [INB] [Int_alpha] [PSI] [VWA ] by SMART
  • Other resources with information on 1TYE
  • Community annotation for 1TYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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