1U0O The mouse von Willebrand Factor A1-botrocetin complex date
authors Fukuda, K., Liddington, R.C.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
related structures by homologous chain: 1IJK, 1U0N, 1UEX
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


  • Primary referenceThe snake venom protein botrocetin acts as a biological brace to promote dysfunctional platelet aggregation., Fukuda K, Doggett T, Laurenzi IJ, Liddington RC, Diacovo TG, Nat Struct Mol Biol 2005 Feb;12(2):152-9. Epub 2005 Jan 16. PMID:15665869
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1u0o.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 1U0O
  • Likely Quarternary Molecular Structure file(s) for 1U0O
  • Structure Factors (223 Kb)
  • Retrieve 1U0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1U0O from S2C, [Save to disk]
  • Re-refined 1u0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1U0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1U0O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1U0O, from MSDmotif at EBI
  • Fold representative 1u0o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1u0o] [1u0o_A] [1u0o_B] [1u0o_C]
  • SWISS-PROT database: [P22029] [P22030] [Q8CIZ8]
  • Domain organization of [BOTA_BOTJA] [BOTB_BOTJA] [VWF_MOUSE] by SWISSPFAM
  • Domains found in 1U0O: [CLECT] [VWA ] by SMART
  • Other resources with information on 1U0O
  • Community annotation for 1U0O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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