1UA4 Crystal Structure of an ADP-dependent Glucokinase from Pyrococcus furiosus date
authors Ito, S., Jeong, J.J., Yoshioka, I., Koga, S., Fushinobu, S., Shoun, H., Wakagi, T.
compound source
symmetry
R_factor
R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand AMP, BGC, GLC enzyme
related structures by homologous chain: 1L2L
Gene
Ontology
ChainFunctionProcessComponent
A
  • glucokinase activity


  • Primary referenceCrystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinase., Ito S, Fushinobu S, Jeong JJ, Yoshioka I, Koga S, Shoun H, Wakagi T, J Mol Biol 2003 Aug 22;331(4):871-83. PMID:12909015
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1ua4.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 1UA4
  • CSU: Contacts of Structural Units for 1UA4
  • Likely Quarternary Molecular Structure file(s) for 1UA4
  • Structure Factors (382 Kb)
  • Retrieve 1UA4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1UA4 from S2C, [Save to disk]
  • Re-refined 1ua4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1UA4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1UA4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1UA4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ua4a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ua4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ua4_A] [1ua4]
  • SWISS-PROT database: [Q9V2Z6]
  • Domain organization of [GLKA_PYRFU] by SWISSPFAM
  • Other resources with information on 1UA4
  • Community annotation for 1UA4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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