1VP9 Methyltransferase date Nov 23, 1996
title Dc26 Mutant Of Vaccinia Virus Protein Vp39 In Complex With S Adenosylhomocysteine
authors A.E.Hodel, P.D.Gershon, F.A.Quiocho
compound source
Molecule: Vp39
Chain: A
Synonym: Poly(A) Polymerase Regulatory Subunit
Ec: 2.7.7.19
Engineered: Yes
Mutation: Yes
Organism_scientific: Vaccinia Virus
Organism_taxid: 10254
Strain: Wr
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Bl21
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.600 67.300 79.600 90.00 117.30 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand SAH enzyme Transferase E.C.2.7.7.19 BRENDA
related structures by homologous chain: 1JSZ, 2VP3
Gene
Ontology
ChainFunctionProcessComponent
A
  • mRNA (nucleoside-2'-O-)-meth...


  • Primary referenceSpecific protein recognition of an mRNA cap through its alkylated base., Hodel AE, Gershon PD, Shi X, Wang SM, Quiocho FA, Nat Struct Biol. 1997 May;4(5):350-4. PMID:9145102
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1vp9.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 1VP9
  • CSU: Contacts of Structural Units for 1VP9
  • Likely Quarternary Molecular Structure file(s) for 1VP9
  • Structure Factors (222 Kb)
  • Retrieve 1VP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VP9 from S2C, [Save to disk]
  • Re-refined 1vp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VP9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1VP9, from MSDmotif at EBI
  • Genome occurence of 1VP9's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vp9__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1vp9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vp9] [1vp9_A]
  • SWISS-PROT database: [P07617]
  • Domain organization of [PAP2_VACCW] by SWISSPFAM
  • Other resources with information on 1VP9
  • Community annotation for 1VP9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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