1X07	Transferase	date	Mar 15, 2005
title	Crystal Structure Of Undecaprenyl Pyrophosphate Synthase In With Mg And Ipp
authors	R.T.Guo, T.P.Ko, A.P.C.Chen, C.J.Kuo, A.H.J.Wang, P.H.Liang
compound		source
Molecule: Undecaprenyl Pyrophosphate Synthetase Chain: A Synonym: Upp Synthetase, Di-Trans,Poly-Cis-Decaprenylcistra Undecaprenyl Diphosphate Synthase, Uds; Ec: 2.5.1.31 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet32
symmetry	Space Group: P 32 2 1	R_factor 0.184 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.792 57.792 119.131 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	IPE, MG, PO4	enzyme	Transferase E.C.2.5.1.31 BRENDA
related structures	by homologous chain: 1V7U, 1X06
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structures of undecaprenyl pyrophosphate synthase in complex with magnesium, isopentenyl pyrophosphate, and farnesyl thiopyrophosphate: roles of the metal ion and conserved residues in catalysis., Guo RT, Ko TP, Chen AP, Kuo CJ, Wang AH, Liang PH, J Biol Chem 2005 May 27;280(21):20762-74. Epub 2005 Mar 23. PMID:15788389

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1x07.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 1X07 CSU: Contacts of Structural Units for 1X07 Likely Quarternary Molecular Structure file(s) for 1X07 Structure Factors (132 Kb) Retrieve 1X07 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1X07 from S2C, [Save to disk] Re-refined 1x07 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1X07 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1X07

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1X07, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1x07_A] [1x07] SWISS-PROT database: [P60472] Domain organization of [UPPS_ECOLI] by SWISSPFAM

Other resources with information on 1X07

Community annotation for 1X07 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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