293D INTERACTION BETWEEN THE LEFT-HANDED Z-DNA AND POLYAMINE-2: THE CRYSTAL STRUCTURE OF THE D(CG)3 AND SPERMIDINE COMPLEX date
authors Ohishi, H., Nakanishi, I., Inubushi, K., Marel, G.A.Van.Der., Boom, J.H.Van., Rich, A., Wang, A.H.J., Hakoshima, T., Tomita, K.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.00
ligand MG, NA, SPD enzyme
Primary referenceInteraction between the left-handed Z-DNA and polyamine-2. The crystal structure of the d(CG)3 and spermidine complex., Ohishi H, Nakanishi I, Inubushi K, van der Marel G, van Boom JH, Rich A, Wang AH, Hakoshima T, Tomita K, FEBS Lett 1996 Aug 5;391(1-2):153-6. PMID:8706905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (293d.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 293D
  • CSU: Contacts of Structural Units for 293D
  • Likely Quarternary Molecular Structure file(s) for 293D
  • Retrieve 293D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 293D from S2C, [Save to disk]
  • View 293D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 293D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 293D, from MSDmotif at EBI
  • Fold representative 293d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [293d_B] [293d_A] [293d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 293D
  • Community annotation for 293D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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