2EA7 Plant Protein date Jan 30, 2007
title Crystal Structure Of Adzuki Bean 7s Globulin-1
authors T.Fukuda, B.Mikami, S.Utsumi
compound source
Molecule: 7s Globulin-1
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Vigna Angularis
Organism_common: Adzuki Bean
Organism_taxid: 3914
Strain: Cultivar, Dainagon
Gene: 7s-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hms174(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21d, Peadzuki7s1
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.598 48.550 119.765 90.00 97.12 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY, CA enzyme
note 2EA7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCharacterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops., Fukuda T, Maruyama N, Salleh MR, Mikami B, Utsumi S, J Agric Food Chem. 2008 Jun 11;56(11):4145-53. Epub 2008 May 8. PMID:18461964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (2ea7.pdb1.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 2EA7
  • CSU: Contacts of Structural Units for 2EA7
  • Likely Quarternary Molecular Structure file(s) for 2EA7
  • Structure Factors (956 Kb)
  • Retrieve 2EA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2EA7 from S2C, [Save to disk]
  • Re-refined 2ea7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2EA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2EA7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2EA7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ea7_C] [2ea7_A] [2ea7_B] [2ea7]
  • SWISS-PROT database: [A4PI98]
  • Domain organization of [A4PI98_PHAAN] by SWISSPFAM
  • Domain found in 2EA7: [Cupin_1 ] by SMART
    • Other resources with information on 2EA7
  • Community annotation for 2EA7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science