2NO3 Signaling Protein Inhibitor date Oct 24, 2006
title Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
authors C.Abad-Zapatero
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A, B
Fragment: Jnk1 Residues 1-364
Synonym: Stress-Activated Protein Kinase Jnk1, C-Jun N- Terminal Kinase 1, Jnk-46;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk8, Jnk1, Prkm8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1;
Chain: F, G
Fragment: Pepjip1 Peptide
Synonym: Jnk-Interacting Protein 1, Jip-1, Jnk Map Kinase Scaffold Protein 1, Islet-Brain 1, Ib-1, Mitogen-Activated Protein Kinase 8-Interacting Protein 1;
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Is Found Naturally In Homo Sapiens
symmetry Space Group: P 32 2 1
R_factor 0.206 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.201 157.201 123.362 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand 859, SO4 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of a new class of 4-anilinopyrimidines as potent c-Jun N-terminal kinase inhibitors: Synthesis and SAR studies., Liu M, Wang S, Clampit JE, Gum RJ, Haasch DL, Rondinone CM, Trevillyan JM, Abad-Zapatero C, Fry EH, Sham HL, Liu G, Bioorg Med Chem Lett. 2007 Feb 1;17(3):668-72. Epub 2006 Nov 2. PMID:17107797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (2no3.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (2no3.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (2no3.pdb3.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 2NO3
  • CSU: Contacts of Structural Units for 2NO3
  • Likely Quarternary Molecular Structure file(s) for 2NO3
  • Retrieve 2NO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NO3 from S2C, [Save to disk]
  • View 2NO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NO3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2NO3, from MSDmotif at EBI
  • Fold representative 2no3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2no3_B] [2no3_F] [2no3] [2no3_G] [2no3_A]
  • SWISS-PROT database: [P45983]
  • Domain organization of [MK08_HUMAN] by SWISSPFAM
  • Domain found in 2NO3: [S_TKc ] by SMART
  • Other resources with information on 2NO3
  • Community annotation for 2NO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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