2Q12	Protein Transport	date	May 23, 2007
title	Crystal Structure Of Bar Domain Of Appl1
authors	X.C.Zhang, G.Zhu
compound		source
Molecule: Dcc-Interacting Protein 13 Alpha Chain: A Fragment: Residues 5-265, Bar Domain Synonym: Dip13 Alpha Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Appl1, Appl, Dip13a, Kiaa1428 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 2	R_factor 0.212 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.985 129.199 36.854 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.79 Å
ligand	MSE	enzyme
Primary reference	Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5., Zhu G, Chen J, Liu J, Brunzelle JS, Huang B, Wakeham N, Terzyan S, Li X, Rao Z, Li G, Zhang XC, EMBO J. 2007 Jul 25;26(14):3484-93. Epub 2007 Jun 21. PMID:17581628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (2q12.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 2Q12 CSU: Contacts of Structural Units for 2Q12 Likely Quarternary Molecular Structure file(s) for 2Q12 Structure Factors (176 Kb) Retrieve 2Q12 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Q12 from S2C, [Save to disk] Re-refined 2q12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Q12 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Q12

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Q12, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2q12] [2q12_A] SWISS-PROT database: [Q9UKG1] Domain organization of [DP13A_HUMAN] by SWISSPFAM

Other resources with information on 2Q12

Community annotation for 2Q12 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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